alignment.setCigar(makeSentinelCigar(alignment.getCigar())); alignment.setAttribute(CG.name(), cigarEncoding);
alignment.setCigar(makeSentinelCigar(alignment.getCigar())); alignment.setAttribute(CG.name(), cigarEncoding);
final int[] cigarEncoding = BinaryCigarCodec.encode(alignment.getCigar()); alignment.setAttribute(CG.name(), cigarEncoding); cigarToWrite = makeSentinelCigar(alignment.getCigar());