/** * Process a <interactorList> * * @param entry a <interactorList> Element */ public void process( final Element entry ) { final Element proteinsList = DOMUtil.getFirstElement( entry, "interactorList" ); if ( proteinsList != null ) { final NodeList someProteins = proteinsList.getElementsByTagName( "proteinInteractor" ); for ( int i = 0; i < someProteins.getLength(); i++ ) { final Node interactor = someProteins.item( i ); final ProteinInteractorParser proteinInteractor = new ProteinInteractorParser( this, (Element) interactor ); final LabelValueBean lvb = proteinInteractor.process(); if ( lvb != null ) { interactors.put( lvb.getLabel(), lvb.getValue() ); } } // interactors } } }
"The global definition will be used instead."; MessageHolder.getInstance().addParserMessage( new Message( root, msg ) ); return new LabelValueBean( id, experiment ); return new LabelValueBean( id, experiment );
"The global definition will be used instead."; MessageHolder.getInstance().addParserMessage( new Message( root, msg ) ); return new LabelValueBean( id, experiment ); return new LabelValueBean( id, experiment );
/** * Process a <interactorList> * * @param entry a <interactorList> Element */ public void process( final Element entry ) { final Element proteinsList = DOMUtil.getFirstElement( entry, "interactorList" ); if ( proteinsList != null ) { final NodeList someProteins = proteinsList.getElementsByTagName( "proteinInteractor" ); for ( int i = 0; i < someProteins.getLength(); i++ ) { final Node interactor = someProteins.item( i ); final ProteinInteractorParser proteinInteractor = new ProteinInteractorParser( this, (Element) interactor ); final LabelValueBean lvb = proteinInteractor.process(); if ( lvb != null ) { interactors.put( lvb.getLabel(), lvb.getValue() ); } } // interactors } } }
"The global definition will be used instead."; MessageHolder.getInstance().addParserMessage( new Message( root, msg ) ); return new LabelValueBean( id, proteinInteractor ); lvb = new LabelValueBean( id, new ProteinInteractorTag( shortlabel, fullname, xref, secondaryXrefs, aliases, hostOrganism, sequence ) ); } catch ( IllegalArgumentException e ) { MessageHolder.getInstance().addParserMessage( new Message( root, e.getMessage() ) );
/** * Process a <interactorList> * * @param entry a <interactorList> Element */ public void process( final Element entry ) { final Element proteinsList = DOMUtil.getFirstElement( entry, "interactorList" ); if ( proteinsList != null ) { final NodeList someProteins = proteinsList.getElementsByTagName( "proteinInteractor" ); for ( int i = 0; i < someProteins.getLength(); i++ ) { final Node interactor = someProteins.item( i ); final ProteinInteractorParser proteinInteractor = new ProteinInteractorParser( this, (Element) interactor ); final LabelValueBean lvb = proteinInteractor.process(); if ( lvb != null ) { interactors.put( lvb.getLabel(), lvb.getValue() ); } } // interactors } } }
"The global definition will be used instead."; MessageHolder.getInstance().addParserMessage( new Message( root, msg ) ); return new LabelValueBean( id, experiment ); return new LabelValueBean( id, experiment );
"The global definition will be used instead."; MessageHolder.getInstance().addParserMessage( new Message( root, msg ) ); return new LabelValueBean( id, proteinInteractor ); lvb = new LabelValueBean( id, new ProteinInteractorTag( shortlabel, fullname, xref, secondaryXrefs, aliases, hostOrganism, sequence ) ); } catch ( IllegalArgumentException e ) { MessageHolder.getInstance().addParserMessage( new Message( root, e.getMessage() ) );
"The global definition will be used instead."; MessageHolder.getInstance().addParserMessage( new Message( root, msg ) ); return new LabelValueBean( id, proteinInteractor ); lvb = new LabelValueBean( id, new ProteinInteractorTag( shortlabel, fullname, xref, secondaryXrefs, aliases, hostOrganism, sequence ) ); } catch ( IllegalArgumentException e ) { MessageHolder.getInstance().addParserMessage( new Message( root, e.getMessage() ) );