How to use
InteractionListParser
in
uk.ac.ebi.intact.application.dataConversion.psiUpload.parser

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiUpload.parser.InteractionListParser (Showing top 3 results out of 315)

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}

  public static EntryTag process( Element entry ) {

    loadGlobalContext( entry );

    // process all interactions
    InteractionListParser interactionList = new InteractionListParser( globalExperiments, globalParticipants );
    Collection interactions = interactionList.process( entry );


    EntryTag entryTag = null;
    try {
      entryTag = new EntryTag( globalExperiments.getExperiments(),
                   globalParticipants.getInteractors(),
                   interactions );
    } catch ( IllegalArgumentException e ) {
      MessageHolder.getInstance().addParserMessage( new Message( entry, e.getMessage() ) );
    }

    return entryTag;
  }
}

  public static EntryTag process( Element entry ) {

    loadGlobalContext( entry );

    // process all interactions
    InteractionListParser interactionList = new InteractionListParser( globalExperiments, globalParticipants );
    Collection interactions = interactionList.process( entry );


    EntryTag entryTag = null;
    try {
      entryTag = new EntryTag( globalExperiments.getExperiments(),
                   globalParticipants.getInteractors(),
                   interactions );
    } catch ( IllegalArgumentException e ) {
      MessageHolder.getInstance().addParserMessage( new Message( entry, e.getMessage() ) );
    }

    return entryTag;
  }
}

  public static EntryTag process( Element entry ) {

    loadGlobalContext( entry );

    // process all interactions
    InteractionListParser interactionList = new InteractionListParser( globalExperiments, globalParticipants );
    Collection interactions = interactionList.process( entry );


    EntryTag entryTag = null;
    try {
      entryTag = new EntryTag( globalExperiments.getExperiments(),
                   globalParticipants.getInteractors(),
                   interactions );
    } catch ( IllegalArgumentException e ) {
      MessageHolder.getInstance().addParserMessage( new Message( entry, e.getMessage() ) );
    }

    return entryTag;
  }
}

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How to useInteractionListParser in uk.ac.ebi.intact.application.dataConversion.psiUpload.parser

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiUpload.parser.InteractionListParser (Showing top 3 results out of 315)

How to use
InteractionListParser
in
uk.ac.ebi.intact.application.dataConversion.psiUpload.parser