final Map experimentDescriptions = entry.getExperimentDescriptions(); final Collection interactions = entry.getInteractions();
final Map experimentDescriptions = entry.getExperimentDescriptions(); final Map proteinInteractors = entry.getProteinInteractors(); final Collection interactions = entry.getInteractions();
public static EntryTag process( Element entry ) { loadGlobalContext( entry ); // process all interactions InteractionListParser interactionList = new InteractionListParser( globalExperiments, globalParticipants ); Collection interactions = interactionList.process( entry ); EntryTag entryTag = null; try { entryTag = new EntryTag( globalExperiments.getExperiments(), globalParticipants.getInteractors(), interactions ); } catch ( IllegalArgumentException e ) { MessageHolder.getInstance().addParserMessage( new Message( entry, e.getMessage() ) ); } return entryTag; } }
final Map experimentDescriptions = entry.getExperimentDescriptions(); final Map proteinInteractors = entry.getProteinInteractors(); final Collection interactions = entry.getInteractions();
public static EntryTag process( Element entry ) { loadGlobalContext( entry ); // process all interactions InteractionListParser interactionList = new InteractionListParser( globalExperiments, globalParticipants ); Collection interactions = interactionList.process( entry ); EntryTag entryTag = null; try { entryTag = new EntryTag( globalExperiments.getExperiments(), globalParticipants.getInteractors(), interactions ); } catch ( IllegalArgumentException e ) { MessageHolder.getInstance().addParserMessage( new Message( entry, e.getMessage() ) ); } return entryTag; } }
final Map experimentDescriptions = entry.getExperimentDescriptions(); final Map proteinInteractors = entry.getProteinInteractors(); final Collection interactions = entry.getInteractions();
final Map experimentDescriptions = entry.getExperimentDescriptions(); final Collection interactions = entry.getInteractions();
public static EntryTag process( Element entry ) { loadGlobalContext( entry ); // process all interactions InteractionListParser interactionList = new InteractionListParser( globalExperiments, globalParticipants ); Collection interactions = interactionList.process( entry ); EntryTag entryTag = null; try { entryTag = new EntryTag( globalExperiments.getExperiments(), globalParticipants.getInteractors(), interactions ); } catch ( IllegalArgumentException e ) { MessageHolder.getInstance().addParserMessage( new Message( entry, e.getMessage() ) ); } return entryTag; } }
final Map experimentDescriptions = entry.getExperimentDescriptions(); final Collection interactions = entry.getInteractions();