How to use
Interaction2xmlPSI1
in
uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi1

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi1.Interaction2xmlPSI1 (Showing top 6 results out of 315)

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}

createNames( session, element, interaction );
createConfidence( session, element, interaction );
createInteractionXrefs( session, element, interaction );
createAttributeList( session, element, interaction, attributeListFilter );
createDissociationConstant( session, element, interaction );

  /**
   * Gives the right version of the Psi XML generator according to the user's session
   *
   * @param session the user session that will indicate which version of the Psi generator is required
   *
   * @return
   */
  public static Interaction2xmlI getInstance( UserSessionDownload session ) {

    if ( session.getPsiVersion().equals( PsiVersion.VERSION_1 ) ) {

      return Interaction2xmlPSI1.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_2 ) ) {

      return Interaction2xmlPSI2.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_25 ) ) {

      return Interaction2xmlPSI25.getInstance();

    } else {

      throw new IllegalStateException( "We do not support PSI version " + session.getPsiVersion() );
    }
  }
}

  /**
   * Gives the right version of the Psi XML generator according to the user's session
   *
   * @param session the user session that will indicate which version of the Psi generator is required
   *
   * @return
   */
  public static Interaction2xmlI getInstance( UserSessionDownload session ) {

    if ( session.getPsiVersion().equals( PsiVersion.VERSION_1 ) ) {

      return Interaction2xmlPSI1.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_2 ) ) {

      return Interaction2xmlPSI2.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_25 ) ) {

      return Interaction2xmlPSI25.getInstance();

    } else {

      throw new IllegalStateException( "We do not support PSI version " + session.getPsiVersion() );
    }
  }
}

createNames( session, element, interaction );
createConfidence( session, element, interaction );
createInteractionXrefs( session, element, interaction );
createAttributeList( session, element, interaction, attributeListFilter );
createDissociationConstant( session, element, interaction );

  /**
   * Gives the right version of the Psi XML generator according to the user's session
   *
   * @param session the user session that will indicate which version of the Psi generator is required
   *
   * @return
   */
  public static Interaction2xmlI getInstance( UserSessionDownload session ) {

    if ( session.getPsiVersion().equals( PsiVersion.VERSION_1 ) ) {

      return Interaction2xmlPSI1.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_2 ) ) {

      return Interaction2xmlPSI2.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_25 ) ) {

      return Interaction2xmlPSI25.getInstance();

    } else {

      throw new IllegalStateException( "We do not support PSI version " + session.getPsiVersion() );
    }
  }
}

createNames( session, element, interaction );
createConfidence( session, element, interaction );
createInteractionXrefs( session, element, interaction );
createAttributeList( session, element, interaction, attributeListFilter );
createDissociationConstant( session, element, interaction );

Javadoc

Process the common behaviour of an IntAct Interaction when exporting PSI version 1.

Most used methods

createAttributeList
createConfidence
createDissociationConstant
createInteractionXrefs
Generate the xref tag of the given protein. That content is attached to the given parent Element.
createNames
getInstance

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How to useInteraction2xmlPSI1 in uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi1

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi1.Interaction2xmlPSI1 (Showing top 6 results out of 315)

How to use
Interaction2xmlPSI1
in
uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi1