/** * Initialise the mapping of PSI1, PSI2, PSI2.5 */ private void initialiseAssociations() { // all PSI version associations.put( new CvClass2Source( CvCellType.class ), CELL_TYPE_NODE_NAME ); associations.put( new CvClass2Source( CvTissue.class ), TISSUE_NODE_NAME ); associations.put( new CvClass2Source( CvCompartment.class ), COMPARTMENT_NODE_NAME ); associations.put( new CvClass2Source( CvComponentRole.class ), ROLE_NODE_NAME ); associations.put( new CvClass2Source( CvInteractionType.class ), INTERACTION_TYPE_NODE_NAME ); // PSI version 1 associationsPSI1only.put( new CvClass2Source( CvIdentification.class ), PARTICIPANT_DETECTION_NODE_NAME ); associationsPSI1only.put( new CvClass2Source( CvInteraction.class ), INTERACTION_DETECTION_NODE_NAME ); associationsPSI1only.put( new CvClass2Source( CvFeatureIdentification.class ), FEATURE_DETECTION_NODE_NAME ); associationsPSI1only.put( new CvClass2Source( CvFeatureType.class ), FEATURE_DESCRIPTION_NODE_NAME ); // PSI version 2 associationsPSI2only.put( new CvClass2Source( CvIdentification.class ), PARTICIPANT_IDENTIFICATION_METHOD_NODE_NAME ); associationsPSI2only.put( new CvClass2Source( CvInteraction.class ), INTERACTION_DETECTION_METHOD_NODE_NAME ); associationsPSI2only.put( new CvClass2Source( CvFeatureIdentification.class ), FEATURE_DETECTION_METHOD_NODE_NAME ); associationsPSI2only.put( new CvClass2Source( CvFeatureType.class, "feature" ), FEATURE_TYPE_NODE_NAME ); associationsPSI2only.put( new CvClass2Source( CvFeatureType.class, "experimentalFormList" ), EXPERIMENTAL_FORM_NAME ); // PSI version 2.5 (but still attached to the PSI 2 mapping) associationsPSI2only.put( new CvClass2Source( CvInteractorType.class ), INTERACTOR_TYPE_NAME ); }
/** * Initialise the mapping of PSI1, PSI2, PSI2.5 */ private void initialiseAssociations() { // all PSI version associations.put( new CvClass2Source( CvCellType.class ), CELL_TYPE_NODE_NAME ); associations.put( new CvClass2Source( CvTissue.class ), TISSUE_NODE_NAME ); associations.put( new CvClass2Source( CvCompartment.class ), COMPARTMENT_NODE_NAME ); associations.put( new CvClass2Source( CvComponentRole.class ), ROLE_NODE_NAME ); associations.put( new CvClass2Source( CvInteractionType.class ), INTERACTION_TYPE_NODE_NAME ); // PSI version 1 associationsPSI1only.put( new CvClass2Source( CvIdentification.class ), PARTICIPANT_DETECTION_NODE_NAME ); associationsPSI1only.put( new CvClass2Source( CvInteraction.class ), INTERACTION_DETECTION_NODE_NAME ); associationsPSI1only.put( new CvClass2Source( CvFeatureIdentification.class ), FEATURE_DETECTION_NODE_NAME ); associationsPSI1only.put( new CvClass2Source( CvFeatureType.class ), FEATURE_DESCRIPTION_NODE_NAME ); // PSI version 2 associationsPSI2only.put( new CvClass2Source( CvIdentification.class ), PARTICIPANT_IDENTIFICATION_METHOD_NODE_NAME ); associationsPSI2only.put( new CvClass2Source( CvInteraction.class ), INTERACTION_DETECTION_METHOD_NODE_NAME ); associationsPSI2only.put( new CvClass2Source( CvFeatureIdentification.class ), FEATURE_DETECTION_METHOD_NODE_NAME ); associationsPSI2only.put( new CvClass2Source( CvFeatureType.class, "feature" ), FEATURE_TYPE_NODE_NAME ); associationsPSI2only.put( new CvClass2Source( CvFeatureType.class, "experimentalFormList" ), EXPERIMENTAL_FORM_NAME ); // PSI version 2.5 (but still attached to the PSI 2 mapping) associationsPSI2only.put( new CvClass2Source( CvInteractorType.class ), INTERACTOR_TYPE_NAME ); }
/** * Initialise the mapping of PSI1, PSI2, PSI2.5 */ private void initialiseAssociations() { // all PSI version associations.put( new CvClass2Source( CvCellType.class ), CELL_TYPE_NODE_NAME ); associations.put( new CvClass2Source( CvTissue.class ), TISSUE_NODE_NAME ); associations.put( new CvClass2Source( CvCompartment.class ), COMPARTMENT_NODE_NAME ); associations.put( new CvClass2Source( CvBiologicalRole.class ), BIOLOGICAL_ROLE_NODE_NAME ); associations.put( new CvClass2Source( CvExperimentalRole.class ), EXPERIMENTAL_ROLE_NODE_NAME ); associations.put( new CvClass2Source( CvInteractionType.class ), INTERACTION_TYPE_NODE_NAME ); // PSI version 1 associationsPSI1only.put( new CvClass2Source( CvIdentification.class ), PARTICIPANT_DETECTION_NODE_NAME ); associationsPSI1only.put( new CvClass2Source( CvInteraction.class ), INTERACTION_DETECTION_NODE_NAME ); associationsPSI1only.put( new CvClass2Source( CvFeatureIdentification.class ), FEATURE_DETECTION_NODE_NAME ); associationsPSI1only.put( new CvClass2Source( CvFeatureType.class ), FEATURE_DESCRIPTION_NODE_NAME ); // PSI version 2 associationsPSI2only.put( new CvClass2Source( CvIdentification.class ), PARTICIPANT_IDENTIFICATION_METHOD_NODE_NAME ); associationsPSI2only.put( new CvClass2Source( CvInteraction.class ), INTERACTION_DETECTION_METHOD_NODE_NAME ); associationsPSI2only.put( new CvClass2Source( CvFeatureIdentification.class ), FEATURE_DETECTION_METHOD_NODE_NAME ); associationsPSI2only.put( new CvClass2Source( CvFeatureType.class, "feature" ), FEATURE_TYPE_NODE_NAME ); associationsPSI2only.put( new CvClass2Source( CvFeatureType.class, "experimentalFormList" ), EXPERIMENTAL_FORM_NAME ); // PSI version 2.5 (but still attached to the PSI 2 mapping) associationsPSI2only.put( new CvClass2Source( CvInteractorType.class ), INTERACTOR_TYPE_NAME ); }
CvClass2Source cvClass2Source = new CvClass2Source( clazz ); cvClass2Source = new CvClass2Source( clazz, parent.getNodeName() );
CvClass2Source cvClass2Source = new CvClass2Source( clazz ); cvClass2Source = new CvClass2Source( clazz, parent.getNodeName() );
CvClass2Source cvClass2Source = new CvClass2Source( clazz ); cvClass2Source = new CvClass2Source( clazz, parent.getNodeName() );