How to use
Confidence2xmlI
in
uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.Confidence2xmlI (Showing top 3 results out of 315)

Common ways to obtain Confidence2xmlI

private void myMethod () {
 Confidence2xmlI c =Conversion.psiDownload.xmlGenerator.psi1.Confidence2xmlPSI1 confidence2xmlPSI1;confidence2xmlPSI1.getInstance()
Conversion.psiDownload.xmlGenerator.psi2.Confidence2xmlPSI2 confidence2xmlPSI2;confidence2xmlPSI2.getInstance()
Conversion.psiDownload.xmlGenerator.psi25.Confidence2xmlPSI25 confidence2xmlPSI25;confidence2xmlPSI25.getInstance()
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}

/**
 * Generate the confidence for the given annotatedObject according to the PSI version specified in the session.
 *
 * @param session
 * @param parent  the parent Element to which we will attach the generated element.
 * @param object  the object from which we will get the confidence values.
 *
 * @return the generated Element or null if none could be generated.
 */
protected Element createConfidence( UserSessionDownload session, Element parent, AnnotatedObject object ) {
  Confidence2xmlI confidence = Confidence2xmlFactory.getInstance( session );
  return confidence.create( session, parent, object );
}

/**
 * Generate the confidence for the given annotatedObject according to the PSI version specified in the session.
 *
 * @param session
 * @param parent  the parent Element to which we will attach the generated element.
 * @param object  the object from which we will get the confidence values.
 *
 * @return the generated Element or null if none could be generated.
 */
protected Element createConfidence( UserSessionDownload session, Element parent, AnnotatedObject object ) {
  Confidence2xmlI confidence = Confidence2xmlFactory.getInstance( session );
  return confidence.create( session, parent, object );
}

/**
 * Generate the confidence for the given annotatedObject according to the PSI version specified in the session.
 *
 * @param session
 * @param parent  the parent Element to which we will attach the generated element.
 * @param object  the object from which we will get the confidence values.
 *
 * @return the generated Element or null if none could be generated.
 */
protected Element createConfidence( UserSessionDownload session, Element parent, AnnotatedObject object ) {
  Confidence2xmlI confidence = Confidence2xmlFactory.getInstance( session );
  return confidence.create( session, parent, object );
}

Javadoc

Implements the tranformation of an IntAct AnnotatedObject's annotated into confidence PSI XML.

Most used methods

create
Generated an proteinParticipant out of an IntAct Component.

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How to useConfidence2xmlI in uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.Confidence2xmlI (Showing top 3 results out of 315)

How to use
Confidence2xmlI
in
uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator