initialize(); currentBioMolecule = Integer.parseInt(line.substring(24).trim()); addToCurrentChainList(line); addToCurrentChainList(line); addToCurrentChainList(line); if (readMatrix(line)) { saveMatrix(); modelNumber++;
bioAssemblyParser = new PDBBioAssemblyParser(); bioAssemblyParser.pdb_REMARK_350_Handler(line);
bioAssemblyParser.setMacromolecularSizes(); pdbHeader.setBioAssemblies(bioAssemblyParser.getTransformationMap());