@Status( status = StatusType.STABLE ) public class RDFExporterPlugin extends ONDEXExport
if (status != null) { sb.append("<h2>Plugin status</h2>"); sb.append("<p><b>").append(status.status()).append("</b>" + " ").append(status.description()).append("</p>");
String status = statusAnnotation.status().getValue().trim();
@Status(description = "parses a very limited set of interpro", status = StatusType.EXPERIMENTAL) public class Parser extends ONDEXParser
.getAnnotation(Status.class); if (statusAnnotation != null) { String status = statusAnnotation.status() .getValue().trim(); String description = statusAnnotation .description().trim();
@Status(description = "Changed to DISCONTINUED (by Christian) as there is no export file or directory.", status = StatusType.DISCONTINUED) public class Statistics extends ONDEXExport
@Status(description = "Tested August 2013 (Artem Lysenko)", status = StatusType.STABLE) public class Parser extends ONDEXParser implements MetaData {
@Status(description = "deprecated", status = StatusType.DISCONTINUED) public class Filter extends ONDEXFilter implements ArgumentNames {
@Status(description = "Tested September 2013 (Artem Lysenko)", status = StatusType.STABLE) public class Parser extends net.sourceforge.ondex.parser.sbml2.Parser {
@Status(description = "Untested formally", status = StatusType.EXPERIMENTAL) @DatabaseTarget(name = "BIOBASE TRANSFAC", description = "A manually curated database of transcription factors",
@Status(description = "Untested formally", status = StatusType.EXPERIMENTAL) @DatabaseTarget(name = "BIOBASE TRANSPATH", description = "A manually curated database of pathways",
@Status(status = StatusType.STABLE, description = "Tested December 2013 (Jacek Grzebyta)") public class Transformer extends ONDEXTransformer implements ArgumentNames {
@Status(status=StatusType.EXPERIMENTAL) public class Export extends ONDEXExport {
@Status(description = "Tested December 2013 (Artem Lysenko) ", status = StatusType.STABLE) @Authors(authors = { "Jan Taubert" }, emails = { "jantaubert at users.sourceforge.net" })
@Status(description = "Set to DISCONTINUED 4 May 2010 due to System.out usage. (Christian)", status = StatusType.DISCONTINUED) public class Export extends ONDEXExport
@Status(description = "Found to be buggy and not considered worth checking fully August 2011 Christian", status = StatusType.DISCONTINUED) public class Mapping extends ONDEXMapping implements ArgumentNames {
@Status(description = "Set to DISCONTINUED 4 May 2010 due to System.out usage. (Christian)", status = StatusType.DISCONTINUED) public class Export extends ONDEXExport
@Authors(authors = { "Jan Taubert" }, emails = { "jantaubert at users.sourceforge.net" }) @Custodians(custodians = { "Jan Taubert" }, emails = { "jantaubert at users.sourceforge.net" }) @Status(status = StatusType.STABLE, description = "Tested October 2012 (Jan Taubert)") public class Parser extends ONDEXParser {
@Status(description = "Untested formally", status = StatusType.EXPERIMENTAL) @DatabaseTarget(name = "Arabidopsis Hormone Database (AHD)", description = "A systematic and comprehensive view of morphological phenotypes regulated by plant hormones.",
@Status(description = "Set to DISCONTINUED 4 May 2010 due to System.out usage. (Christian)", status = StatusType.DISCONTINUED) public class Export extends ONDEXExport