Integer precursorScanNumberInt = precursorScanNumber.isPresent() ? Integer.valueOf(precursorScanNumber.get()) : null; IsolationInfo isolation = new SimpleIsolationInfo(isolationRange, null, Double.valueOf(precursorMz.get()), precursorChargeInt, null, precursorScanNumberInt); isolations.add(isolation);
Integer precursorScanNumberInt = precursorScanNumber.isPresent() ? Integer.valueOf(precursorScanNumber.get()) : null; IsolationInfo isolation = new SimpleIsolationInfo(isolationRange, null, Double.valueOf(precursorMz.get()), precursorChargeInt, null, precursorScanNumberInt); isolations.add(isolation);
if (!textContent.isEmpty()) precursorMz = Double.parseDouble(textContent); IsolationInfo newIsolation = new SimpleIsolationInfo(Range.singleton(precursorMz), null, precursorMz, precursorCharge, null, precursorScanNumber); buildingScan.getIsolations().add(newIsolation);
if (!textContent.isEmpty()) precursorMz = Double.parseDouble(textContent); IsolationInfo newIsolation = new SimpleIsolationInfo(Range.singleton(precursorMz), null, precursorMz, precursorCharge, null, precursorScanNumber); buildingScan.getIsolations().add(newIsolation);
new SimpleIsolationInfo(Range.singleton(Double.valueOf(precursorIsolationMz.get())), null, Double.valueOf(precursorIsolationMz.get()), null, activationInfo, precursorScanNumberInt); new SimpleIsolationInfo(Range.singleton(Double.valueOf(productIsolationMz.get())), null, Double.valueOf(productIsolationMz.get()), null, null, null); isolations.add(isolationInfo);
IsolationInfo isolation = new SimpleIsolationInfo(Range.singleton(precursorMz), null, precursorMz, precursorCharge, null, null); newScan.getIsolations().add(isolation);
new SimpleIsolationInfo(Range.singleton(Double.valueOf(precursorIsolationMz.get())), null, Double.valueOf(precursorIsolationMz.get()), null, activationInfo, precursorScanNumberInt); new SimpleIsolationInfo(Range.singleton(Double.valueOf(productIsolationMz.get())), null, Double.valueOf(productIsolationMz.get()), null, null, null); isolations.add(isolationInfo);
IsolationInfo isolation = new SimpleIsolationInfo(Range.singleton(precursorMz), null, precursorMz, precursorCharge, null, null); newScan.getIsolations().add(isolation);
IsolationInfo isolation = new SimpleIsolationInfo(Range.singleton(precursorMz), null, precursorMz, precursorCharge, null, null); newScan.getIsolations().add(isolation);
new SimpleIsolationInfo(q1IsolationMzRangeMap.get(q1), null, q1, null, null, null); isolations.add(isolationInfo); isolationInfo = new SimpleIsolationInfo(q3IsolationMzRangeMap.get(q3), null, q3, null, null, null); isolations.add(isolationInfo);
new SimpleIsolationInfo(q1IsolationMzRangeMap.get(q1), null, q1, null, null, null); isolations.add(isolationInfo); isolationInfo = new SimpleIsolationInfo(q3IsolationMzRangeMap.get(q3), null, q3, null, null, null); isolations.add(isolationInfo);
break; case TAG_PRECURSOR_MZ: IsolationInfo newIsolation = new SimpleIsolationInfo( Range.singleton(xmlStreamReader.getText().toDouble()), null, xmlStreamReader.getText().toDouble(), vars.precursorCharge, null, vars.precursorScanNumber);
break; case TAG_PRECURSOR_MZ: IsolationInfo newIsolation = new SimpleIsolationInfo( Range.singleton(xmlStreamReader.getText().toDouble()), null, xmlStreamReader.getText().toDouble(), vars.precursorCharge, null, vars.precursorScanNumber);