refBase = Utils.normalizeBase(refBase); final byte base = substitutionMatrix.base(refBase, substitution.getCode()); substitution.setBase(base); bases[i] = Utils.normalizeBase(bases[i]);
- refOffsetZeroBased, (byte) 'N'); refBase = Utils.normalizeBase(refBase); final byte base = substitutionMatrix.base(refBase, substitution.getCode()); substitution.setBase(base);
- refOffsetZeroBased, (byte) 'N'); refBase = Utils.normalizeBase(refBase); final byte base = substitutionMatrix.base(refBase, substitution.getCode()); substitution.setBase(base);